Articles

Dynamical importance and network perturbations. Ethan Young and Mason A. Porter. Physical Review E 110 (6): 064304, 2024.

Le, H.V., Lopez Cruz, D. CEO compensation and risk taking: S&P 1500 firms. Bus Econ(2024). https://doi.org/10.1057/s11369-024-00381-3

E. Angelini and H. Qian. "Statistical analysis of random motion and energetic behavior of counting: Gibbs' theory revisited." J. Phys. Chem. B 2023, 127, 11, 2552–2564

Le, V., Nagpal, C., & Dubrawski, A. (2023). Identification of patients with stable coronary artery disease who benefit from ACE inhibitors using Cox mixture model for heterogeneous treatment effects. Journal of Critical Care, 74, 154208.

Bradley C. Naylor, Christian N. K. Anderson, Marcus Hadfield, David H. Parkinson, Austin Ahlstrom, Austin Hannemann, Chad R. Quilling, Kyle J. Cutler, Russell L. Denton, Robert Adamson, Thomas E. Angel, Rebecca S. Burlett, Paul S. Hafen, John. C. Dallon, Mark K. Transtrum, Robert D. Hyldahl, and John C. Price. 

"Utilizing Nonequilibrium Isotope Enrichments to Dramatically Increase Turnover Measurement Ranges in Single Biopsy Samples from Humans" (Sep 2022). 

Journal of Proteome Research 2022 21 (11), 2703-2714. 

DOI: 10.1021/acs.jproteome.2c00380. 

Link: https://pubs.acs.org/doi/10.1021/acs.jproteome.2c00380

Liu, Y.H., Smith, S., Mihalas S., Shea-Brown E., Sumbul U., “Biologically-plausible backpropagation through arbitrary timespans via local neuromodulators”, Advances in Neural Information Processing Systems, 2022.

Liu, Y.H., Ghosh A., Richards B. A., Shea-Brown E., Lajoie G., “Beyond accuracy: generalization properties of bio-plausible temporal credit assignment rules”, Advances in Neural Information Processing Systems, 2022. 

Maass, K., Aravkin, A., & Kim, M. (2021). A feasibility study of a hyperparameter tuning approach to automated inverse planning in radiotherapy. arXiv preprint arXiv: arXiv:2105.07024.

Yang, Y.-J. and Cheng, Y.-C., "Potentials of continuous Markov processes and random perturbations"  J. Phys. A: Math. Theor. 54 195001 (2021)

Yang, Y.-J., & Qian, H. Bivectorial Nonequilibrium Thermodynamics: Cycle Affinity, Vorticity Potential, and Onsager’s Principle. J Stat. Phys. 182, 46 (2021). 

Liu, Y.H., Smith, S.J., Mihalas S., Shea-Brown E., Sumbul U., “Cell-type–specific neuromodulation guides synaptic credit assignment in a spiking neural network”, Proceedings of the National Academy of Sciences, 2021.

Liu, Y.H., Smith, S.J., Mihalas S., Shea-Brown E., Sumbul U., “A solution to temporal credit assignment using cell-type-specific modulatory signals”, bioRxiv, 2020.

Yang, Y.-J. & Qian, H. Unified formalism for entropy production and fluctuation relations. Phys. Rev. E 101 , 022129 (2020)

 Maass, K., Kim, M., & Aravkin, A. (2020). A nonconvex optimization approach to IMRT planning with dose-volume constraints. arXiv preprint arXiv:1907.10712. 

Ahlstrom, Austin, "Computational Regiospecific Analysis of Brain Lipidomic Profiles" (2019). Undergraduate Honors Theses. 70.  
https://scholarsarchive.byu.edu/studentpub_uht/70

Maass, K., & Kim, M. (2019). A Markov decision process approach to optimizing cancer therapy using multiple modalities. Mathematical Medicine and Biology: A Journal of the IMA. doi:10.1093/imammb/dqz004.

Chen, X. and K. K. Tung: "Global surface warming enhanced by weak Atlantic overturning circulation", Nature, 559, 387-391, July 2018.

Liu, Hexuan, Jimin Kim, and Eli Shlizerman. "Functional connectomics from neural dynamics: probabilistic graphical models for neuronal network of Caenorhabditis elegans." Philosophical Transactions of the Royal Society B: Biological Sciences 373.1758 (2018): 20170377.

D. Rim, S. Moe, and R. J. LeVeque, Transport Reversal for Model Reduction of Hyperbolic Partial Differential Equations, SIAM/ASA Journal on Uncertainty Quantification 6(2018), pp. 118-150. doi:10.1137/17M1113679

Barker, Blake, Rose Nguyen, Bjorn Sandstede, Nathaniel Ventura, and Colin Wahl. "Computing Evans functions numerically via boundary-value problems." Physica D: Nonlinear Phenomena. Accepted Dec 2017.

Tim Leung and Xin Li (2015). Optimal mean reversion trading with transaction costs and stop-loss exit, International Journal of Theoretical and Applied Finance 18 (03), 1550020

Liu, Benjamin R., and Elizabeth M. Cherry. "Image-based structural modeling of the cardiac Purkinje network." BioMed research international 2015 (2015).

Phillips, Austin and Kot, Mark. (2015). Persistence in a two-dimensional moving-habitat model. Bulletin of Mathematical Biology, 77, 2125-2159.

Chen, X. and K. K. Tung: "Varying planetary heat sink led to global-warming slowdown and acceleration", Science, 345, 897 (2014)

Tung, K. K. and J. Zhou:"Using data to attribute episodes of warming and cooling in instrumental records", Proceedings of National Academy of Sciences, 110, 2058-2063, (2013).