Author/Title Research Type Related Fields
E. Angelini and H. Qian. "Statistical analysis of random motion and energetic behavior of counting: Gibbs' theory revisited." J. Phys. Chem. B 2023, 127, 11, 2552–2564 Articles
Le, V., Nagpal, C., & Dubrawski, A. (2023). Identification of patients with stable coronary artery disease who benefit from ACE inhibitors using Cox mixture model for heterogeneous treatment effects. Journal of Critical Care74, 154208. Publications, Articles
Bradley C. Naylor, Christian N. K. Anderson, Marcus Hadfield, David H. Parkinson, Austin Ahlstrom, Austin Hannemann, Chad R. Quilling, Kyle J. Cutler, Russell L. Denton, Robert Adamson, Thomas E. Angel, Rebecca S. Burlett, Paul S. Hafen, John. C. Dallon, Mark K. Transtrum, Robert D. Hyldahl, and John C. Price.  "Utilizing Nonequilibrium Isotope Enrichments to Dramatically Increase Turnover Measurement Ranges in Single Biopsy Samples from Humans" (Sep 2022).  Journal of Proteome Research 2022 21 (11), 2703-2714.  DOI: 10.1021/acs.jproteome.2c00380.  Link: Publications, Articles
Liu, Y.H., Smith, S., Mihalas S., Shea-Brown E., Sumbul U., “Biologically-plausible backpropagation through arbitrary timespans via local neuromodulators”, Advances in Neural Information Processing Systems, 2022. Publications, Articles
Liu, Y.H., Ghosh A., Richards B. A., Shea-Brown E., Lajoie G., “Beyond accuracy: generalization properties of bio-plausible temporal credit assignment rules”, Advances in Neural Information Processing Systems, 2022.  Publications, Articles
Maass, K., Aravkin, A., & Kim, M. (2021). A feasibility study of a hyperparameter tuning approach to automated inverse planning in radiotherapy. arXiv preprint arXiv: arXiv:2105.07024. Publications, Articles
Yang, Y.-J. and Cheng, Y.-C., "Potentials of continuous Markov processes and random perturbations"  J. Phys. A: Math. Theor. 54 195001 (2021) Publications, Articles
Yang, Y.-J., & Qian, H. Bivectorial Nonequilibrium Thermodynamics: Cycle Affinity, Vorticity Potential, and Onsager’s Principle. J Stat. Phys. 182, 46 (2021).   Publications, Articles
Liu, Y.H., Smith, S.J., Mihalas S., Shea-Brown E., Sumbul U., “Cell-type–specific neuromodulation guides synaptic credit assignment in a spiking neural network”, Proceedings of the National Academy of Sciences, 2021. Publications, Articles
Liu, Y.H., Smith, S.J., Mihalas S., Shea-Brown E., Sumbul U., “A solution to temporal credit assignment using cell-type-specific modulatory signals”, bioRxiv, 2020. Publications, Articles
Yang, Y.-J. & Qian, H. Unified formalism for entropy production and fluctuation relations. Phys. Rev. E 101 , 022129 (2020) Publications, Articles
 Maass, K., Kim, M., & Aravkin, A. (2020). A nonconvex optimization approach to IMRT planning with dose-volume constraints. arXiv preprint arXiv:1907.10712.  Publications, Articles
Ahlstrom, Austin, "Computational Regiospecific Analysis of Brain Lipidomic Profiles" (2019). Undergraduate Honors Theses. 70. Publications, Articles
Maass, K., & Kim, M. (2019). A Markov decision process approach to optimizing cancer therapy using multiple modalities. Mathematical Medicine and Biology: A Journal of the IMA. doi:10.1093/imammb/dqz004. Publications, Articles
Chen, X. and K. K. Tung: "Global surface warming enhanced by weak Atlantic overturning circulation", Nature, 559, 387-391, July 2018. Publications, Articles
Liu, Hexuan, Jimin Kim, and Eli Shlizerman. "Functional connectomics from neural dynamics: probabilistic graphical models for neuronal network of Caenorhabditis elegans." Philosophical Transactions of the Royal Society B: Biological Sciences 373.1758 (2018): 20170377. Publications, Articles
D. Rim, S. Moe, and R. J. LeVeque, Transport Reversal for Model Reduction of Hyperbolic Partial Differential Equations, SIAM/ASA Journal on Uncertainty Quantification 6(2018), pp. 118-150. doi:10.1137/17M1113679 Publications, Articles
Barker, Blake, Rose Nguyen, Bjorn Sandstede, Nathaniel Ventura, and Colin Wahl. "Computing Evans functions numerically via boundary-value problems." Physica D: Nonlinear Phenomena. Accepted Dec 2017. Publications, Articles
Tim Leung and Xin Li (2015). Optimal mean reversion trading with transaction costs and stop-loss exit, International Journal of Theoretical and Applied Finance 18 (03), 1550020 Publications, Articles
Liu, Benjamin R., and Elizabeth M. Cherry. "Image-based structural modeling of the cardiac Purkinje network." BioMed research international 2015 (2015). Publications, Articles, Graduate, Graduate Publications
Phillips, Austin and Kot, Mark. (2015). Persistence in a two-dimensional moving-habitat model. Bulletin of Mathematical Biology, 77, 2125-2159. Publications, Articles
Chen, X. and K. K. Tung: "Varying planetary heat sink led to global-warming slowdown and acceleration", Science, 345, 897 (2014) Publications, Articles
Tung, K. K. and J. Zhou:"Using data to attribute episodes of warming and cooling in instrumental records", Proceedings of National Academy of Sciences, 110, 2058-2063, (2013). Publications, Articles
Liu, Y.H., Baratin A., Cornford J., Mihalas S., Shea-Brown E., Lajoie G., “How connectivity structure shapes rich and lazy learning in neural circuits”, International Conference on Learning Representations (ICLR), 2024 (accepted).  Publications, Articles